species:   Opsin
pid:       PID1970
parent:    n_os_milR_16
paralog:   
locus:     JAAVMX010000007.1:651491-651544
matures:   ['UACCAUGUCGUCGAGGGC', 'CUCCCUCGUCUCCGUGUUUGC']
srr:       SRR12952898
genome:    /Users/jax/+Genomes/Fungal_genomes/Opsin.GCA_012934285.1_ASM1293428v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952898.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952898.cram JAAVMX010000007.1:651491-651544

1 out of bounds
6 alignments
6 proper strand
4 stranded perfect matches

     *********************** ********************     
UCUUGGGCUCCCUCGUCUCCGUGUUUGCGUAUACCAUGUCGUCGAGGGCCGAGA
((((((...((((((.(..((((...........))))..).))))))))))))
-------------------------------UACCAUGUCGUCGAGGGC----- l=18 a=4 c
-------CUCCCUCGUCUCCGUGUUUGC-------------------------- l=21 a=0 c*
-------------------------------UACCAUGUCGUCGAGGGC----- l=18 a=4 ma
-------CUCCCUCGUCUCCGUGUUUGC-------------------------- l=21 a=0 ma*

-------------------------------UACCAUGUCGUCGAGGGu----- l=18 a=1 
-------------------------------UACCAUGUCGUCGAGGGC----- l=18 a=4 (c,ma)
-------------------------------UACCAUGUCGUCGAGGGCCc--- l=20 a=1 

mb-00010
ax-1001001
ku-01
ss-101011101110
fn-011
